23 lines
916 B
Factor
23 lines
916 B
Factor
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! Copyright (C) 2020 Bubbler.
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! See http://factorcode.org/license.txt for BSD license.
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USING: assocs help.markup help.syntax kernel strings ;
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IN: rosalind.cons
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HELP: cons
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{ $values
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{ "assoc" "An assoc of ID string and DNA string" }
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{ "histo" "Profile matrix" } { "consensus" "Consensus string" }
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}
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{ $description "Solves the problem CONS on Rosalind: given a collection of DNA sequences, output the histogram of nucleotides at each position and the consensus string." { $nl "" }
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"A profile matrix is a 4×n matrix where each column shows the histogram of A, C, G, T nucleotides at that position in the given DNAs. A consensus string is a string formed by picking the most common symbol for each position."
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} ;
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HELP: cons-main
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{ $description "Solves the problem CONS on Rosalind, using a real dataset." } ;
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ARTICLE: "rosalind.cons" "rosalind.cons"
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{ $vocab-link "rosalind.cons" }
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;
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ABOUT: "rosalind.cons"
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