35 lines
1.1 KiB
Factor
35 lines
1.1 KiB
Factor
! Copyright (C) 2020 Bubbler.
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! See http://factorcode.org/license.txt for BSD license.
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USING: help.markup help.syntax kernel sequences strings ;
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IN: rosalind.long
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HELP: find-most-overlapping-pair
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{ $values
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{ "strs" sequence }
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{ "strs'" sequence }
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}
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{ $description "Given a set of strings, greedily select two strings that form the most overlap, and return a 3-item sequence containing the two strings and their join." } ;
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HELP: long
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{ $values
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{ "strs" sequence }
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{ "str" string }
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}
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{ $description "Solves the problem LONG on Rosalind: given a collection of DNA segments and the information that gluing together pairs of reads that overlap by more than half their length gives a unique string, find the unique string." } ;
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HELP: long-main
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{ $description "Solves the problem LONG on Rosalind, using a real dataset." } ;
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HELP: overlap
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{ $values
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{ "str1" string } { "str2" string }
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{ "str" string }
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}
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{ $description "Overlaps two strings to form the shortest superstring, which contains str1 as its head and str2 as its tail." } ;
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ARTICLE: "rosalind.long" "rosalind.long"
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{ $vocab-link "rosalind.long" }
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;
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ABOUT: "rosalind.long"
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